satDNA Analyzer

Current Released Version: 1.2 (October, 2006)

User Manual

The input file for satDNA Analyzer can be made of many aligned sequences from two different species. The user can remove any sequence for the analysis just by adding the character (%) at the beginning of the species name alignment in the input file. Sites containing alignment gaps can be either included or excluded. Missing data are considered as ignored positions and they are completely excluded for the analysis.

The name of species should have an ID tag at the beginning of the name. Automatically, user will be asked to enter an ID for each species. A valid ID should include a specific feature of each species name. Sequences belonging to the same species do not need to be sequentially ordered in the alignment.

The program generates two outputs.

Notes to Syntax